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PDBsum entry 3hqg

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Top Page protein dna_rna ligands tunnels links
Tunnel analysis for: 3hqg calculated with MOLE 2.0 PDB id
3hqg
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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11 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.31 11.1 -1.55 -0.54 21.2 84 2 2 1 2 0 0 0  -4 DG B,-3 DA B,-2 DC B
2 1.35 16.5 -1.80 -0.78 23.4 82 3 3 1 2 0 0 0  -4 DG B,-3 DA B,-2 DC B
3 1.48 13.6 -1.68 -0.40 22.0 82 2 1 0 2 1 0 0  0 DA B
4 1.45 17.5 -1.31 -0.70 14.7 85 2 2 1 2 0 0 0  1 GOL A,0 DA B,1 DG B,2 DG B,3 DC B
5 1.30 10.8 -2.26 0.08 35.7 75 3 1 0 3 1 0 0  
6 1.45 4.4 0.30 -0.16 10.6 74 1 0 0 2 0 0 0  
7 1.38 11.2 2.00 0.54 6.3 80 1 0 0 5 0 0 0  
8 2.02 3.5 -3.70 -0.59 26.4 88 1 0 1 0 0 0 0  -2 DC B,-1 DC B,1 DG B
9 1.85 8.0 -0.76 -0.14 16.0 77 2 0 0 1 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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