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PDBsum entry 3hoz

Go to PDB code: 
Top Page protein dna_rna metals Protein-protein interface(s) links
Protein chain B PDB id
3hoz
Protein chain B highlighted
(click to view)
 
Jmol
Motifs
Secondary structure
Wiring diagram
Residue conservation
ProMotif
17 sheets
16 beta hairpins
3 psi loops
13 beta bulges
48 strands
37 helices
48 helix-helix interacs
116 beta turns
25 gamma turns
Chain 1418 a.a.
Chain 1109 a.a.
Chain 266 a.a.
Chain 179 a.a.
Chain 214 a.a.
Chain 87 a.a.
Chain 171 a.a.
Chain 136 a.a.
Chain 119 a.a.
Chain 65 a.a.
Chain 115 a.a.
Chain 46 a.a.
  
Chain (1109 residues)

UniProt code: P08518 (RPB2_YEAST)   [Pfam]

structural classification (7 domains) :
Domain Links CATH no.   Class Architecture
1 Unassigned = - -
2 Unassigned = - -
3 Unassigned = - -
4 3.90.1110.10 = Alpha Beta Alpha-Beta Complex
5 Unassigned = - -
6 2.40.270.10 = Mainly Beta Beta Barrel
7 2.40.50.150 = Mainly Beta Beta Barrel

Key:  
Sec. struc: Helices labelled H1, H2, ... and strands by their sheets A, B, ...
  Helix Strand  
Motifs:   
    beta turn     gamma turn     beta hairpin
Residue contacts:   
    to DNA/RNA     to metal
PDB SITE records:   
 AC1  AC2  AC3  AC4  AC5
 AC6  AC7  AC8  AC9
PROSITE patterns:   
Low   High conservation

Jmol
RasMol

FASTA
file
Domain 1
Topology diagram


Hera


Domain 2
Topology diagram


Hera


Domain 3
Topology diagram


Hera


Domain 4
Topology diagram


Hera


Domain 5
Topology diagram


Hera


Domain 6
Topology diagram


Hera


Domain 7
Topology diagram


Hera


  Analysis of sequence's residue conservation
  Related protein sequences in the PDB
  
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