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PDBsum entry 3hoz

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Pore analysis for: 3hoz calculated with MOLE 2.0 PDB id
3hoz
Pores calculated on whole structure Pores calculated excluding ligands

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21 pores, coloured by radius 31 pores, coloured by radius 31 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.79 1.88 32.3 -2.25 -0.67 19.4 88 3 2 3 1 0 1 0  
2 2.18 2.97 44.5 -1.47 -0.56 12.9 90 5 2 5 2 2 0 0  
3 3.52 5.73 56.1 -1.38 -0.42 24.9 85 8 7 6 9 0 0 0  
4 1.12 1.54 57.6 0.23 0.16 14.9 82 4 3 3 8 3 0 0  
5 1.11 1.60 62.0 0.02 0.17 14.6 82 4 3 4 7 3 1 0  
6 1.46 2.85 63.5 -2.05 -0.48 24.2 78 5 6 4 4 2 3 0  
7 3.47 3.47 63.6 -1.93 -0.63 23.2 83 6 3 1 2 0 0 0  A 2 P A 3 P C 4 P C 5 P A 6 P DT 17 T DG 24 T DG
25 T DT 26 T DC 27 T DA 28 T
8 1.69 2.03 73.5 -0.96 -0.04 15.9 75 8 5 5 8 6 4 0  
9 1.59 2.31 76.6 -2.16 -0.41 30.6 77 16 8 3 5 2 2 0  
10 2.55 2.85 87.9 -1.68 -0.35 22.6 82 12 7 5 5 2 4 0  C 1 P A 2 P DT 26 T DC 27 T DA 28 T
11 1.66 2.32 88.7 -1.83 -0.29 22.8 80 11 7 6 8 3 2 0  
12 1.87 2.05 90.3 -1.73 -0.33 23.6 86 8 6 5 5 2 2 0  
13 2.19 2.20 91.7 -1.81 -0.37 23.6 84 10 8 8 5 4 4 0  
14 1.20 1.88 96.7 -1.15 -0.24 23.3 79 13 8 6 11 4 0 0  
15 2.19 2.20 95.8 -2.23 -0.58 25.5 81 12 8 5 2 2 4 0  C 1 P A 2 P DT 26 T DC 27 T DA 28 T
16 2.53 2.84 104.4 -1.87 -0.36 25.9 83 11 7 4 5 2 4 0  C 1 P A 2 P A 3 P C 4 P C 5 P A 6 P DT 17 T DG 24
T DG 25 T DT 26 T
17 2.01 2.23 110.5 -1.94 -0.42 24.7 81 18 8 6 7 1 5 0  C 1 P A 2 P DT 26 T DC 27 T DA 28 T
18 2.21 2.21 112.3 -2.38 -0.58 28.3 81 11 8 4 2 2 4 0  C 1 P A 2 P A 3 P C 4 P C 5 P A 6 P DT 17 T DG 24
T DG 25 T DT 26 T
19 1.87 2.04 113.0 -1.90 -0.38 25.1 84 14 7 6 7 0 3 0  
20 2.03 2.21 114.3 -1.98 -0.43 25.1 83 16 9 9 7 2 5 0  
21 1.87 2.04 118.4 -2.19 -0.54 24.7 82 9 8 7 5 3 5 0  
22 2.04 2.31 127.1 -1.98 -0.40 26.5 81 17 8 5 7 1 5 0  C 1 P A 2 P A 3 P C 4 P C 5 P A 6 P DT 17 T DG 24
T DG 25 T DT 26 T
23 1.84 2.01 129.4 -1.75 -0.48 20.9 79 11 11 6 8 1 4 0  
24 2.39 2.62 142.8 -1.46 -0.35 21.6 81 18 8 9 10 4 3 0  DA 1 N DC 2 N DG 12 T
25 1.92 2.05 158.4 -1.42 -0.38 22.8 82 21 11 9 12 2 3 0  DA 1 N DC 2 N DG 12 T
26 1.26 1.40 169.4 -1.48 -0.35 17.6 84 13 8 12 12 3 2 0  
27 2.39 2.43 188.1 -1.51 -0.44 20.5 82 18 11 11 11 4 4 0  DA 1 N A 2 P A 3 P C 4 P C 5 P A 6 P G 7 P DT 17
T DC 18 T DT 19 T DC 22 T DG 24 T DG 25 T DT 26 T
DC 27 T DA 28 T
28 2.19 3.17 202.2 -1.51 -0.43 22.0 85 19 16 15 17 3 3 0  
29 1.89 1.92 291.3 -1.59 -0.45 21.4 83 22 17 14 17 3 8 0  DA 1 N C 1 P A 2 P A 3 P C 4 P C 5 P A 6 P G 7 P
DT 17 T DC 18 T DT 19 T DC 22 T DG 24 T DG 25 T
DT 26 T
30 1.11 1.39 31.6 -2.03 -0.53 26.1 80 5 2 2 3 1 0 0  
31 1.11 1.59 33.5 -0.42 -0.15 13.6 87 4 3 3 8 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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