 |
PDBsum entry 3hoy
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Transcription,transferase/DNA/RNA hybrid
|
PDB id
|
|
|
|
3hoy
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Contents |
 |
|
|
|
|
|
|
|
|
|
|
|
1419 a.a.
|
|
|
|
|
|
|
|
|
|
|
1105 a.a.
|
|
|
|
|
|
|
|
|
|
|
266 a.a.
|
|
|
|
|
|
|
|
|
|
|
178 a.a.
|
|
|
|
|
|
|
|
|
|
|
213 a.a.
|
|
|
|
|
|
|
|
|
|
|
87 a.a.
|
|
|
|
|
|
|
|
|
|
|
171 a.a.
|
|
|
|
|
|
|
|
|
|
|
133 a.a.
|
|
|
|
|
|
|
|
|
|
|
119 a.a.
|
|
|
|
|
|
|
|
|
|
|
65 a.a.
|
|
|
|
|
|
|
|
|
|
|
114 a.a.
|
|
|
|
|
|
|
|
|
|
|
46 a.a.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Generate full PROCHECK analyses
|
PROCHECK summary for 3hoy
Ramachandran plot
PROCHECK statistics
1. Ramachandran Plot statistics
No. of
residues %-tage
------ ------
Most favoured regions [A,B,L] 2444 70.6%**
Additional allowed regions [a,b,l,p] 846 24.5%
Generously allowed regions [~a,~b,~l,~p] 125 3.6%
Disallowed regions [XX] 45 1.3%*
---- ------
Non-glycine and non-proline residues 3460 100.0%
End-residues (excl. Gly and Pro) 50
Glycine residues 236
Proline residues 171
----
Total number of residues 3917
Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good
quality model would be expected to have over 90% in the most favoured regions [A,B,L].
2. G-Factors
Average
Parameter Score Score
--------- ----- -----
Dihedral angles:-
Phi-psi distribution -1.05**
Chi1-chi2 distribution -0.58*
Chi1 only -0.15
Chi3 & chi4 0.45
Omega 0.55
-0.22
=====
Main-chain covalent forces:-
Main-chain bond lengths 0.58
Main-chain bond angles 0.27
0.40
=====
OVERALL AVERAGE 0.03
=====
G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is.
Values below -0.5* - unusual
Values below -1.0** - highly unusual
Important note: The main-chain
bond-lengths and bond angles are compared with
the Engh & Huber (1991) ideal values derived
from small-molecule data. Therefore, structures
refined using different restraints may show
apparently large deviations from normality.
|
|
|
