PDBsum entry 3how Go to PDB code:  Pore analysis for: 3how calculated with MOLE 2.0 PDB id 3how Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   19 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 2.51 27.0 -1.09 -0.06 22.4 73 4 2 1 2 1 1 1   2 1.28 1.33 35.4 -1.73 -0.30 25.4 84 5 3 2 3 1 2 0   3 1.18 1.27 43.3 -1.64 -0.19 16.5 77 6 2 5 2 1 2 1   4 3.02 3.03 55.3 -1.85 -0.58 23.9 81 7 7 3 3 0 0 0  DA 11 1 DG 12 1 DA 1 2 5 1.22 1.22 73.9 -1.30 -0.20 21.2 81 6 3 2 4 2 1 0  DC 27 1 DA 28 1 C 1 3 A 2 3 6 1.64 1.83 75.4 -2.26 -0.60 25.5 80 11 4 4 1 3 0 0   7 1.92 2.06 78.0 -1.78 -0.41 22.1 82 10 4 4 4 2 3 0  DA 11 1 DG 12 1 8 1.44 1.97 114.3 -1.78 -0.39 22.8 78 11 10 4 7 4 2 0  DA 11 1 DG 12 1 DA 1 2 DC 2 2 9 2.01 3.22 117.9 -1.95 -0.44 21.2 82 15 5 6 6 2 5 0  DC 27 1 C 1 3 A 2 3 10 1.90 2.02 118.3 -1.22 -0.28 17.9 81 9 6 7 6 2 3 0  DA 14 1 DG 15 1 DT 17 1 11 2.58 2.58 121.9 -1.63 -0.46 21.8 83 12 5 4 6 1 2 0  DA 11 1 DG 12 1 DT 17 1 DA 18 1 DT 19 1 DG 24 1 DG 25 1 DT 26 1 DC 27 1 A 2 3 A 3 3 C 4 3 C 5 3 A 6 3 G 7 3 G 8 3 12 3.47 3.65 119.8 -2.73 -0.55 31.1 81 17 10 7 2 3 3 0  DC 27 1 C 1 3 A 2 3 13 1.31 1.27 125.9 -1.62 -0.41 21.3 80 14 7 3 6 2 3 0  DG 15 1 DT 17 1 DA 28 1 A 2 3 A 3 3 C 4 3 C 5 3 14 2.34 4.01 125.5 -1.90 -0.33 24.5 77 9 5 3 6 3 3 0   15 2.24 2.35 130.5 -1.66 -0.38 18.6 83 10 6 5 6 1 4 0  DT 17 1 DA 18 1 DT 19 1 DG 24 1 DG 25 1 DT 26 1 DC 27 1 A 2 3 A 3 3 C 4 3 C 5 3 A 6 3 G 7 3 G 8 3 16 2.07 3.26 126.9 -1.48 -0.43 21.6 82 9 8 6 5 1 1 0  DA 14 1 DG 15 1 DT 17 1 DG 24 1 DG 25 1 DT 26 1 DC 27 1 A 2 3 A 3 3 C 4 3 C 5 3 A 6 3 17 2.08 3.27 128.7 -1.57 -0.51 20.8 86 11 9 8 11 1 1 0  DA 14 1 DC 5 2 DT 6 2 DT 7 2 18 2.07 3.28 134.2 -1.15 -0.30 18.6 82 10 6 7 7 2 3 0  DA 11 1 DG 12 1 DA 14 1 DG 15 1 DT 17 1 19 1.30 1.25 139.5 -1.65 -0.45 22.3 81 15 7 3 6 2 2 0  DA 11 1 DG 12 1 DG 15 1 DT 17 1 DA 28 1 A 2 3 A 3 3 C 4 3 C 5 3 20 1.77 2.87 142.2 -2.22 -0.58 23.1 81 10 12 8 3 2 2 0   21 1.48 2.20 168.0 -1.61 -0.40 22.8 81 17 16 15 10 6 3 0   22 1.17 1.35 166.8 -1.98 -0.40 24.1 80 18 12 10 10 7 2 0   23 2.87 2.86 170.4 -1.99 -0.51 22.6 86 21 11 17 7 2 1 0   24 1.70 2.10 172.8 -1.78 -0.51 24.6 85 19 15 14 10 2 1 0   25 1.30 1.92 171.7 -2.68 -0.51 31.5 80 17 9 7 1 3 2 0   26 1.85 3.02 220.5 -1.93 -0.52 23.8 84 22 17 20 10 4 3 0   27 1.93 2.82 232.8 -2.02 -0.43 24.5 81 23 16 16 9 6 3 0   28 1.75 2.99 232.0 -1.98 -0.52 23.4 83 21 13 16 8 4 3 0  DA 18 1 DT 19 1 DG 24 1 DG 25 1 DT 26 1 DC 27 1 A 2 3 A 3 3 C 4 3 C 5 3 A 6 3 G 7 3 G 8 3 U 11 3 29 1.44 1.35 258.9 -1.82 -0.51 22.4 83 25 15 16 10 5 3 0  DT 17 1 DA 18 1 DA 28 1 A 2 3 A 3 3 C 4 3 C 5 3 A 6 3 U 11 3 30 1.24 1.13 311.7 -2.31 -0.46 27.7 81 27 21 12 10 6 7 0  DA 28 1 C 1 3 A 2 3 Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.