PDBsum entry 3hlm

Tunnel analysis for: 3hlm calculated with

MOLE 2.0

PDB id

3hlm

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
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visualization
with HETATM:

without HETATM:

7 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.07

1.22

35.2

-0.65

0.05

4.2

79

2

1

4

6

5

0

0

LLP 279 B

2

1.31

1.31

33.7

-0.73

0.14

8.9

72

2

2

1

3

4

2

1

LLP 279 D

3

1.29

1.29

38.3

-1.12

-0.05

14.0

75

4

3

1

4

3

1

1

LLP 279 D

4

1.21

1.22

32.2

0.35

0.49

7.9

70

2

1

0

7

4

2

1

5

1.17

1.35

29.4

0.43

0.63

9.8

71

2

1

0

7

4

2

0

6

1.32

2.26

29.4

0.47

0.60

7.5

70

2

1

0

7

4

2

1

7

1.31

3.07

23.3

0.92

0.52

6.6

80

3

0

1

6

1

0

1

8

1.16

1.99

26.5

0.27

0.36

5.5

66

2

1

3

2

6

0

1

9

1.16

2.05

26.0

0.33

0.44

3.6

70

1

1

4

2

5

0

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.