PDBsum entry 3hhm

Pore analysis for: 3hhm calculated with

MOLE 2.0

PDB id

3hhm

Pores calculated on whole structure

Pores calculated excluding ligands

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12 pores, coloured by radius

16 pores, coloured by radius

16 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.09

2.33

29.8

-2.04

-0.37

22.5

80

4

3

3

1

1

0

0

2

1.14

1.24

32.2

0.31

-0.12

8.0

81

1

2

2

6

2

1

0

3

1.96

1.97

35.0

-2.28

-0.72

28.7

84

8

5

2

1

0

0

0

4

1.96

2.01

37.6

-1.33

-0.36

22.3

81

8

3

2

2

1

0

0

5

1.58

2.00

46.3

-2.22

-0.46

21.2

78

9

5

4

3

3

0

1

6

2.37

2.85

48.3

-2.42

-0.54

25.1

81

9

9

6

2

2

0

0

7

1.59

3.27

68.7

-2.19

-0.47

18.4

85

7

5

13

5

3

2

0

8

2.56

3.94

70.9

-2.05

-0.39

26.8

85

9

7

6

2

2

2

1

KWT 1833 A

9

1.99

2.56

75.5

-2.28

-0.48

22.1

81

11

8

7

1

3

4

1

10

2.09

3.76

85.7

-2.29

-0.45

32.1

86

10

10

5

4

1

2

1

KWT 1833 A

11

1.17

1.19

88.5

-2.03

-0.66

27.7

79

8

7

2

2

0

2

1

12

1.99

2.62

90.1

-2.05

-0.50

22.1

84

10

7

8

4

2

4

1

KWT 1833 A

13

1.25

3.48

102.1

-1.29

-0.30

19.6

82

7

6

4

8

3

1

1

14

1.14

1.15

104.5

-1.81

-0.50

26.0

83

12

12

6

3

2

1

2

15

1.25

3.47

119.2

-1.73

-0.53

26.0

88

12

11

8

6

0

0

1

KWT 1833 A

16

1.27

2.04

139.0

-1.87

-0.50

24.8

78

11

11

6

7

3

4

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.