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PDBsum entry 3h4p

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Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 3h4p calculated with MOLE 2.0 PDB id
3h4p
Pores calculated on whole structure Pores calculated excluding ligands

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38 pores, coloured by radius 38 pores, coloured by radius 38 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.20 1.22 29.8 2.06 0.47 4.2 88 1 1 0 11 0 0 0  
2 0.84 1.55 53.5 -1.66 -0.38 21.1 80 5 4 3 5 2 0 0  
3 1.51 1.89 66.5 -1.73 -0.26 27.2 75 6 5 1 7 1 0 0  
4 1.12 2.08 83.4 -2.32 -0.21 36.3 80 11 5 0 5 1 0 0  
5 1.63 2.46 93.6 -0.47 -0.19 11.9 82 2 10 8 15 4 1 0  
6 1.64 1.64 104.1 -1.82 -0.38 24.8 80 11 8 4 7 3 0 0  
7 1.49 1.56 128.0 -0.89 -0.22 18.8 77 6 12 8 13 5 1 0  
8 1.17 1.83 127.1 -2.30 -0.15 35.1 80 17 6 0 9 3 0 0  
9 1.31 2.12 148.5 -1.49 -0.08 23.8 81 14 10 3 16 8 0 0  
10 1.30 2.03 156.5 -2.21 -0.23 33.8 79 19 9 0 11 3 0 0  
11 1.55 1.64 163.2 -0.67 -0.20 16.5 79 6 14 11 17 5 2 0  
12 1.29 2.16 189.1 -0.47 -0.09 16.7 81 13 14 10 23 6 1 0  
13 1.29 2.19 191.3 -2.25 -0.29 30.5 80 23 10 3 12 8 0 0  
14 1.35 2.29 26.2 -0.45 0.16 17.5 73 2 3 0 4 1 0 0  
15 1.49 1.82 31.0 -0.88 0.12 24.5 76 3 3 0 5 1 0 0  
16 1.29 2.00 123.8 -1.85 -0.44 29.0 77 11 10 2 8 1 0 0  
17 1.36 2.28 123.7 -2.07 -0.40 28.5 76 15 13 2 7 2 0 0  
18 1.27 1.84 126.7 -1.99 -0.39 28.6 77 13 13 4 8 3 0 0  
19 1.26 1.33 142.6 -1.08 -0.31 18.3 80 9 14 8 14 4 1 0  
20 1.45 1.64 151.9 -2.32 -0.45 31.8 78 20 18 5 9 3 0 0  
21 1.31 1.33 169.1 -2.47 -0.58 32.0 80 19 17 6 6 2 0 0  
22 1.24 2.24 173.2 -0.77 -0.26 16.1 80 9 14 12 16 6 2 0  
23 1.39 1.80 196.6 -0.20 -0.13 12.3 79 6 14 14 23 7 3 0  
24 1.42 1.94 194.6 -2.25 -0.40 28.8 76 23 19 5 12 4 0 0  
25 1.26 1.70 191.5 -1.34 -0.23 25.7 80 20 13 4 18 7 0 0  
26 1.15 3.73 211.1 -2.30 -0.47 31.2 78 25 19 7 12 3 0 0  
27 1.21 1.46 229.2 -1.78 -0.38 25.6 82 23 18 9 18 3 1 0  
28 1.27 1.70 222.0 -1.47 -0.17 26.0 79 29 14 3 20 8 0 0  
29 1.21 1.48 233.0 -0.79 -0.18 17.1 82 15 19 12 29 6 2 0  
30 1.26 2.37 240.1 -2.47 -0.52 31.1 78 30 23 7 10 3 0 0  
31 1.22 3.94 242.0 -0.55 -0.19 15.7 80 9 16 14 25 6 3 0  
32 1.48 2.45 246.2 -0.88 -0.19 17.4 79 15 18 13 23 8 2 0  
33 1.25 1.47 262.9 -1.86 -0.37 24.9 81 30 19 10 21 4 1 0  
34 1.08 2.95 275.5 -0.38 -0.18 14.0 81 10 16 17 28 6 4 0  
35 1.40 2.10 36.8 -0.46 0.11 18.4 73 3 4 0 4 1 0 0  
36 1.30 1.48 70.0 0.29 -0.04 11.3 93 3 3 2 12 0 0 0  
37 1.25 1.67 31.7 1.69 0.23 3.5 94 0 2 2 12 0 0 0  
38 1.34 1.92 27.7 1.26 0.13 4.5 94 1 1 2 12 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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