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PDBsum entry 3gxi

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 3gxi calculated with MOLE 2.0 PDB id
3gxi
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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11 tunnels, coloured by tunnel radius 25 tunnels, coloured by tunnel radius 25 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.34 57.6 -0.01 0.35 12.9 63 4 5 3 6 12 1 1  
2 1.31 64.6 -0.75 0.06 13.7 66 3 4 5 2 12 0 1  508 PO4 A,504 PO4 C
3 1.38 76.1 -0.43 0.22 15.3 64 7 5 2 7 12 2 1  508 PO4 B
4 1.42 76.8 -1.44 -0.31 19.9 74 7 8 7 2 10 2 1  514 PO4 C,504 PO4 D
5 1.39 102.2 -0.96 -0.08 13.4 73 4 8 9 9 13 6 1  
6 1.40 114.3 -0.79 0.04 17.2 69 12 8 7 7 18 3 1  515 PO4 C,506 PO4 D
7 1.58 12.3 -1.61 -0.47 14.7 78 1 1 2 0 1 2 0  
8 1.45 12.2 -1.91 -0.57 16.2 78 1 1 2 0 1 2 0  
9 1.54 13.0 -0.71 -0.53 11.2 82 2 1 2 1 2 0 0  512 PO4 D
10 1.54 15.0 -0.56 -0.41 11.6 80 3 0 2 2 2 0 0  512 PO4 D
11 1.69 17.3 0.34 0.00 9.8 75 1 2 0 3 2 0 0  
12 1.69 18.3 -0.49 -0.34 11.8 74 1 2 0 2 2 1 0  
13 1.51 13.7 -0.47 -0.41 10.2 80 3 0 2 2 2 0 0  
14 1.60 18.5 0.29 -0.01 11.3 75 1 2 0 3 2 0 0  
15 1.60 21.3 -0.65 -0.36 14.1 66 1 2 0 1 2 2 1  
16 1.46 18.2 -0.06 -0.26 7.8 87 2 0 2 4 1 0 0  
17 1.47 20.1 -0.32 -0.33 7.8 87 2 0 3 4 1 0 0  
18 1.46 22.9 -0.53 -0.32 10.6 81 1 0 2 2 2 1 0  
19 1.49 16.9 -0.10 -0.25 7.7 87 2 0 2 4 1 0 0  
20 1.48 17.2 -0.23 -0.35 7.8 87 2 0 2 4 1 0 0  
21 1.50 12.5 -1.68 -0.41 15.8 78 1 1 2 0 1 2 0  
22 2.26 9.4 -0.40 0.34 18.8 69 2 1 0 1 1 2 0  
23 1.55 5.0 -1.17 -0.19 14.8 86 1 0 1 2 0 1 0  
24 1.69 13.1 -0.49 0.01 11.0 79 1 0 2 2 2 0 0  502 PO4 D
25 1.92 6.0 -1.08 -0.20 12.3 86 1 0 1 2 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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