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PDBsum entry 3gvk

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 3gvk calculated with MOLE 2.0 PDB id
3gvk
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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22 tunnels, coloured by tunnel radius 19 tunnels, coloured by tunnel radius 19 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.30 50.9 0.49 0.17 13.4 82 4 3 2 6 4 1 0  
2 1.30 52.3 0.62 0.15 12.1 85 3 4 3 7 4 1 0  
3 1.30 55.2 0.58 0.17 12.2 84 4 3 3 6 4 1 0  
4 1.36 67.3 0.07 0.09 11.9 80 5 4 6 8 8 1 0  
5 1.36 69.3 0.17 0.10 11.3 78 5 4 6 8 9 1 0  
6 1.29 69.6 -0.39 0.06 17.3 81 5 7 5 7 8 1 0  
7 1.31 30.3 -1.23 0.01 19.8 72 3 3 0 3 2 2 0  
8 1.29 15.3 -0.86 -0.20 17.2 77 1 1 1 2 2 0 1  
9 1.35 19.9 -0.91 -0.35 16.6 69 1 1 1 0 4 0 1  
10 1.33 23.5 -1.06 0.02 18.4 71 3 3 0 3 2 1 0  
11 1.85 10.6 0.06 -0.01 8.0 71 1 0 0 1 3 0 0  
12 1.89 12.3 0.09 -0.05 7.0 66 1 0 0 0 3 0 0  
13 3.19 8.3 -1.04 0.21 21.2 78 2 0 1 1 1 1 0  
14 2.46 7.3 0.56 0.31 9.2 77 1 0 1 1 2 0 0  
15 2.24 7.4 0.56 0.31 9.2 77 1 0 1 1 2 0 0  
16 1.71 3.4 0.35 -0.18 13.6 82 0 1 1 1 0 0 0  
17 1.32 14.6 0.88 0.51 3.7 78 1 0 0 3 1 0 0  
18 1.27 6.9 -0.48 -0.54 4.1 83 0 1 2 0 1 1 0  
19 1.61 5.4 -0.80 -0.04 9.3 80 1 0 0 1 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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