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PDBsum entry 3gvj

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Tunnel analysis for: 3gvj calculated with MOLE 2.0 PDB id
3gvj
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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16 tunnels, coloured by tunnel radius 14 tunnels, coloured by tunnel radius 14 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.52 18.6 -0.48 0.45 13.5 67 1 1 0 3 2 1 0  
2 1.25 21.3 -0.69 -0.34 12.9 87 4 1 1 3 1 0 0  
3 1.55 26.0 -0.58 0.28 14.1 69 1 2 0 4 3 1 0  
4 1.44 17.7 -1.13 -0.27 19.1 73 1 1 1 1 3 1 1  
5 1.86 7.5 1.46 0.78 1.1 73 0 0 0 3 3 0 0  
6 2.46 5.8 -0.74 0.67 13.8 71 2 0 1 1 3 0 0  
7 1.30 10.4 -0.98 -0.06 21.5 85 2 0 1 1 1 0 0  
8 1.42 5.9 0.79 0.31 12.2 70 1 0 0 2 1 0 0  
9 2.03 8.5 -0.21 -0.40 8.1 65 2 0 0 1 1 0 0  
10 1.99 10.1 -0.29 -0.35 11.9 69 2 0 0 1 0 0 0  
11 1.92 4.6 -2.79 -0.93 32.4 91 1 2 2 0 0 0 0  
12 1.28 7.8 1.38 0.80 1.5 77 0 1 0 3 1 0 0  
13 1.30 3.6 -1.43 -0.71 15.5 83 1 1 0 0 0 0 0  
14 1.32 6.8 -0.92 -0.60 5.5 83 0 1 2 0 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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