PDBsum entry 3gv5 Go to PDB code:  Tunnel analysis for: 3gv5 calculated with MOLE 2.0 PDB id 3gv5 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.69 1.69 20.5 -0.57 -0.44 8.1 77 1 0 2 1 1 0 0  DG 873 E DT 842 F DC 843 F DA 844 F DT 845 F 2 1.48 1.48 24.1 -0.57 0.18 12.5 65 2 2 0 1 3 1 0  DG 873 E DT 842 F DC 843 F 3 1.32 1.32 27.6 -0.86 -0.09 20.9 65 4 1 0 2 2 0 0  ADI 424 D DG 873 E DC 837 F DT 842 F 4 1.69 1.70 31.4 -0.68 -0.48 12.5 74 2 1 2 2 1 1 0  DG 871 E DA 872 E DG 873 E DT 842 F DC 843 F DA 844 F DT 845 F DC 846 F 5 1.69 1.70 31.9 0.16 -0.27 7.8 73 1 1 1 3 1 1 0  DG 871 E DA 872 E DG 873 E DT 842 F DC 843 F DA 844 F DT 845 F DC 846 F 6 1.32 1.32 39.0 0.26 -0.01 6.9 58 2 0 0 2 2 0 0  ADI 424 D DT 870 E DA 872 E DG 873 E DA 838 F DT 839 F DT 840 F DT 842 F 7 1.69 1.71 40.1 0.00 -0.42 7.0 69 1 1 0 3 1 0 0  DT 870 E DG 871 E DA 872 E DG 873 E DT 842 F DC 843 F DA 844 F DT 845 F DC 846 F DC 847 F DA 848 F Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.