PDBsum entry 3gtp Go to PDB code:  Pore analysis for: 3gtp calculated with MOLE 2.0 PDB id 3gtp Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.22 2.75 67.8 -1.80 -0.51 21.4 86 6 4 7 3 0 0 0   2 3.04 3.39 86.4 -0.63 -0.18 17.5 87 9 3 6 7 1 1 0  DC 1 N C 13 R DG 17 T 3 2.50 2.63 88.7 -1.47 -0.28 20.8 86 8 2 4 4 1 1 0  A 1 R G 4 R A 5 R G 6 R DG 17 T DA 18 T DC 23 T DT 24 T DC 25 T DG 26 T DA 27 T DT 28 T 4 2.51 2.63 91.9 -1.99 -0.47 26.0 86 11 4 6 3 1 3 0  A 1 R G 4 R A 5 R G 6 R DG 17 T DA 18 T DC 23 T DT 24 T DC 25 T 5 2.25 2.38 100.9 -1.73 -0.34 26.9 79 17 9 2 8 4 0 0   6 1.34 2.40 111.8 -1.53 -0.50 18.0 86 12 7 9 5 2 0 0  DT 8 N DC 9 N C 13 R DA 10 T DG 11 T 7 2.74 2.70 114.4 -1.27 -0.54 14.8 86 12 5 7 6 0 2 0  DC 4 N DT 6 N DT 8 N DG 10 N C 13 R DA 3 T DC 4 T DC 5 T DA 7 T DT 8 T DA 9 T DA 10 T 8 1.19 2.15 121.5 -0.26 -0.15 10.7 80 7 3 2 9 5 2 0  DC 4 N DT 5 N DT 6 N DA 7 N DT 8 N DG 11 T DC 12 T DA 13 T DG 14 T DA 15 T 9 1.16 1.14 119.5 -1.00 -0.44 12.2 86 12 5 10 13 0 5 0  DC 4 N C 13 R DT 8 T DA 9 T DA 10 T 10 1.43 1.62 118.5 -2.33 -0.57 24.8 84 8 3 5 2 1 1 0   11 1.19 2.52 123.9 -0.35 -0.10 12.7 83 11 5 6 12 3 4 0  DC 1 N DC 4 N DT 5 N DT 8 T DA 9 T DA 10 T 12 1.26 1.45 126.4 -0.54 -0.10 18.4 82 10 7 2 10 3 2 0  DC 4 N A 1 R G 4 R A 5 R G 6 R DA 15 T DG 17 T DA 18 T DC 23 T DT 24 T DC 25 T DG 26 T DA 27 T DT 28 T 13 2.10 2.64 125.6 -1.46 -0.59 19.7 85 8 3 1 4 0 0 0  DT 5 N DT 6 N DA 7 N DT 8 N DG 10 N A 1 R G 4 R A 5 R G 6 R DA 3 T DC 4 T DC 5 T DA 13 T DG 14 T DA 15 T DG 17 T DA 18 T DC 23 T DT 24 T DC 25 T DG 26 T DA 27 T DT 28 T 14 1.23 1.43 126.0 -0.47 -0.16 13.3 83 13 6 8 12 3 4 0  DC 4 N DT 5 N C 13 R DT 8 T DA 9 T DA 10 T 15 1.18 1.53 133.1 -1.36 -0.25 22.4 81 12 5 3 9 2 1 0  DC 1 N 16 1.16 1.50 141.6 -1.37 -0.29 22.4 82 17 7 5 9 2 1 0  C 13 R 17 1.27 2.14 143.2 -1.67 -0.45 20.0 82 8 7 9 10 3 2 0  DC 4 N DT 6 N DT 8 N DG 10 N DA 3 T DC 4 T DC 5 T DA 7 T DT 8 T DA 9 T 18 1.20 1.41 146.3 -1.41 -0.29 22.5 78 13 12 4 9 4 2 0  DC 1 N DG 17 T 19 1.43 1.70 144.4 -1.28 -0.33 19.2 83 11 4 7 7 1 1 0  DC 1 N A 1 R G 4 R A 5 R G 6 R C 13 R DG 14 T DG 17 T DA 18 T DC 23 T DT 24 T DC 25 T DG 26 T DA 27 T DT 28 T 20 1.27 1.98 144.8 -0.57 -0.11 16.5 78 4 6 5 11 2 2 0   21 1.41 2.45 148.2 -1.45 -0.35 17.9 83 9 4 5 6 2 1 0  DC 1 N DT 8 N A 1 R G 4 R A 5 R G 6 R DG 11 T DC 12 T DA 13 T DG 14 T DG 17 T DA 18 T DC 23 T DT 24 T DC 25 T DG 26 T DA 27 T DT 28 T 22 1.12 1.24 177.8 -1.57 -0.28 23.4 80 20 9 5 10 5 6 0   23 1.11 1.47 174.8 -1.50 -0.40 20.5 82 12 8 5 7 2 2 0  DC 4 N DT 6 N DT 8 N DG 10 N DA 3 T DC 4 T DC 5 T DA 7 T DT 8 T DA 9 T DA 10 T 24 1.12 1.12 179.9 -1.20 -0.35 16.9 83 13 8 8 14 2 5 0  DC 4 N DT 8 T DA 9 T DA 10 T 25 1.28 1.47 199.2 -1.31 -0.24 23.6 79 15 11 5 13 3 3 0   26 1.20 1.52 203.6 -1.97 -0.23 26.8 77 17 12 7 7 4 2 0   27 1.24 1.43 227.8 -0.83 -0.11 20.4 80 15 13 7 20 4 5 0   28 1.30 1.50 240.2 -1.19 -0.26 20.9 81 16 10 7 17 3 3 0  DT 8 N DG 10 N DA 3 T DC 4 T DC 5 T DG 6 T DA 7 T DT 8 T 29 1.33 2.01 240.1 -1.19 -0.17 23.6 81 15 15 6 14 1 2 0   30 1.35 2.23 343.0 -1.43 -0.28 22.2 81 27 15 11 20 6 6 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.