spacer
spacer

PDBsum entry 3gnx

Go to PDB code: 
protein ligands metals Protein-protein interface(s) links
Isomerase PDB id
3gnx
Jmol PyMol
Contents
Protein chains
385 a.a. *
Ligands
XYL ×2
Metals
_MN ×4
Waters ×430
* Residue conservation analysis
PDB id:
3gnx
Name: Isomerase
Title: Structure of dehydrated d-xylose isomerase from streptomyces rubiginosus
Structure: Xylose isomerase. Chain: a, e. Ec: 5.3.1.5
Source: Streptomyces rubiginosus. Organism_taxid: 1929
Resolution:
2.00Å     R-factor:   0.163     R-free:   0.206
Authors: F.Gramiccia,M.Schiltz
Date:
18-Mar-09     Release date:   23-Mar-10    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P24300  (XYLA_STRRU) -  Xylose isomerase
Seq:
Struc:
388 a.a.
385 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 1 residue position (black cross)

 Enzyme reactions 
   Enzyme class: E.C.5.3.1.5  - Xylose isomerase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: D-xylopyranose = D-xylulose
D-xylopyranose
Bound ligand (Het Group name = XYL)
corresponds exactly
= D-xylulose
      Cofactor: Mg(2+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site
 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     cytoplasm   1 term 
  Biological process     carbohydrate metabolic process   3 terms 
  Biochemical function     isomerase activity     3 terms  

 

spacer

spacer