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PDBsum entry 3glg

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3glg calculated with MOLE 2.0 PDB id
3glg
Pores calculated on whole structure Pores calculated excluding ligands

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18 pores, coloured by radius 22 pores, coloured by radius 22 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.13 1.53 30.3 -0.40 -0.18 17.1 75 3 4 1 5 0 0 0  
2 1.28 1.42 47.0 -1.94 -0.53 23.8 78 6 5 3 2 1 1 0  ADP 406 G
3 3.01 3.20 54.7 -1.71 -0.26 19.1 78 4 7 4 4 4 1 0  
4 3.16 3.39 58.5 -2.38 -0.08 27.1 76 10 7 3 3 4 2 0  
5 1.51 3.90 68.4 -1.08 -0.26 18.0 78 4 6 2 9 2 1 0  
6 1.22 2.56 82.8 -1.86 -0.47 22.4 77 12 7 5 5 2 4 0  ADP 402 C BEF 403 C MG 413 C DA 10 L
7 1.24 2.81 84.6 -1.87 -0.54 23.2 80 8 10 6 7 1 2 0  ADP 402 C BEF 403 C MG 413 C DT 9 L DA 10 L
8 2.19 3.03 87.6 -2.36 -0.52 28.0 79 8 13 3 5 3 2 0  DT 9 L DA 10 L
9 1.20 1.41 93.9 -1.72 -0.57 25.2 85 10 9 4 8 0 0 0  ADP 400 B
10 1.18 2.16 111.8 -1.56 -0.49 18.9 80 13 8 9 8 2 4 0  ADP 406 G BEF 407 G MG 415 G ADP 408 H MG 416 H B
EF 409 I DA 8 N DT 9 N DA 10 N
11 1.88 1.88 115.0 -0.98 -0.29 15.5 82 10 3 7 10 3 2 0  
12 1.18 2.17 116.1 -1.81 -0.45 21.0 78 13 11 6 7 5 4 0  ADP 406 G BEF 407 G MG 415 G DA 8 N DT 9 N DA 10 N
13 1.28 1.42 137.6 -1.80 -0.49 22.8 81 15 12 6 7 3 2 0  ADP 400 B DA 8 L DT 9 L DA 10 L
14 1.26 2.44 140.9 -1.97 -0.50 20.9 76 12 11 7 6 4 4 0  ADP 402 C BEF 403 C MG 413 C DA 10 L
15 2.22 2.98 140.8 -1.85 -0.34 26.8 77 12 13 5 8 4 6 0  DT 9 L DA 10 L
16 1.25 2.56 155.6 -1.30 -0.42 18.3 79 16 7 9 11 3 5 0  ADP 408 H MG 416 H BEF 409 I DA 10 N
17 1.21 2.46 176.4 -1.33 -0.45 18.3 80 18 8 11 12 3 5 0  ADP 406 G BEF 407 G MG 415 G DA 8 N DT 9 N DA 10 N
18 1.67 3.75 179.1 -2.19 -0.44 24.9 82 18 12 17 12 2 2 0  DT 9 L DA 10 L
19 1.33 1.30 190.7 -1.55 -0.38 22.7 79 19 12 8 10 4 6 0  ADP 400 B DA 8 L DT 9 L DA 10 L
20 1.53 1.57 207.2 -1.34 -0.54 17.6 86 12 13 14 13 2 1 0  ADP 408 H MG 416 H BEF 409 I
21 2.30 3.39 208.7 -1.95 -0.58 23.6 88 14 16 13 12 1 0 0  
22 1.33 1.40 237.0 -1.87 -0.39 21.8 81 27 14 19 12 5 3 0  ADP 400 B DA 8 L DT 9 L DA 10 L

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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