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PDBsum entry 3ger
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Tunnel analysis for: 3ger calculated with  MOLE 2.0
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PDB id
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3ger
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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15 tunnels,
coloured by tunnel radius |
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6 tunnels,
coloured by
tunnel radius
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6 tunnels,
coloured as in
list below
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Length
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Hydropathy
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Hydrophobicity
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Polarity
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Mutability
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Residue..type
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Ligands
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Radius |
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1 |
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1.84 |
17.3 |
-0.40 |
-0.80 |
3.4 |
0 |
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0 |
0 |
0 |
0 |
0 |
0 |
0 |
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21 A A,22 U A,23 A A,24 A A,47 U A,50 C A,51 U A,
52 A A,71 C A,72 G A,73 A A,74 C A,91 6GU A,109
NCO A,112 NCO A
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2 |
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1.85 |
22.3 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
18 C A,19 A A,21 A A,22 U A,23 A A,47 U A,50 C A,
51 U A,52 A A,72 G A,73 A A,74 C A,91 6GU A,112
NCO A
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3 |
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1.84 |
33.2 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
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15 G A,16 G A,17 A A,18 C A,19 A A,20 U A,21 A A,
22 U A,23 A A,47 U A,50 C A,51 U A,52 A A,73 A A,
74 C A,75 U A,91 6GU A,112 NCO A
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4 |
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1.84 |
33.4 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
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15 G A,18 C A,19 A A,20 U A,21 A A,22 U A,23 A A,
47 U A,50 C A,51 U A,52 A A,73 A A,74 C A,75 U A,
76 A A,77 U A,91 6GU A,112 NCO A
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5 |
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3.93 |
3.5 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
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21 A A,47 U A,48 U A,49 U A,77 U A
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6 |
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3.46 |
8.6 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
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20 U A,21 A A,47 U A,48 U A,49 U A,77 U A,78 G A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program