PDBsum entry 3gd7 Go to PDB code:  Pore analysis for: 3gd7 calculated with MOLE 2.0 PDB id 3gd7 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.60 1.60 30.2 -2.07 -0.65 18.4 83 5 4 2 4 1 0 0   2 2.72 3.85 31.4 -1.52 -0.45 16.8 84 3 1 5 6 1 2 0   3 2.19 2.45 34.1 -0.91 -0.27 13.3 86 2 3 5 2 5 2 0  B44 1 A 4 2.50 2.55 43.3 -1.06 -0.33 17.3 80 6 4 4 5 4 3 0  B44 1 A B44 2 B 5 1.85 2.39 51.6 -1.30 -0.29 16.2 84 7 5 8 3 4 2 0  B44 2 B 6 2.11 2.15 52.5 -1.26 -0.45 18.9 83 9 5 5 9 3 2 0  B44 1 A B44 2 B 7 3.25 3.30 52.5 -1.76 -0.33 25.7 82 8 6 4 5 2 4 1  B44 4 D 8 1.83 2.40 54.1 -1.44 -0.43 21.0 84 9 6 8 5 4 2 0  B44 1 A B44 2 B 9 2.11 2.17 54.9 -1.15 -0.31 13.9 81 8 4 4 8 4 2 0  B44 2 B 10 3.28 3.30 55.7 -1.81 -0.29 25.1 83 10 5 5 6 2 3 1  B44 2 B 11 3.96 4.63 60.0 -1.71 -0.31 24.7 79 9 5 3 7 2 3 2  B44 4 D 12 3.52 4.73 62.8 -1.80 -0.26 24.7 79 10 4 4 8 2 2 2  B44 2 B 13 2.12 2.14 64.2 -1.30 -0.28 19.5 80 12 3 5 10 4 0 0  B44 1 A B44 2 B 14 1.83 2.39 66.3 -1.64 -0.30 22.8 81 13 4 8 7 5 0 0  B44 1 A B44 2 B 15 2.49 2.54 70.2 -2.04 -0.27 27.6 79 13 3 6 9 3 2 2  B44 1 A B44 2 B 16 2.49 2.55 73.6 -1.99 -0.23 31.5 83 14 6 4 6 3 3 0  B44 1 A B44 2 B B44 4 D 17 1.84 2.40 82.4 -2.04 -0.29 25.6 82 15 5 10 6 4 1 2  B44 2 B 18 2.12 2.17 85.4 -1.92 -0.29 23.8 79 16 5 6 11 4 1 2  B44 2 B 19 1.82 2.39 85.8 -2.05 -0.28 29.5 84 16 8 8 4 4 2 0  B44 2 B B44 4 D 20 2.13 2.14 88.8 -1.85 -0.29 26.2 82 17 7 4 9 4 2 0  B44 2 B B44 4 D 21 1.78 1.78 89.6 -1.48 -0.06 28.3 77 18 4 6 11 5 2 0  B44 1 A B44 2 B B44 3 C 22 1.17 1.47 93.3 -1.31 -0.20 22.1 82 16 4 5 15 6 2 1  B44 2 B B44 4 D 23 1.28 1.49 100.7 -1.52 -0.22 24.3 81 20 3 7 14 7 2 1  B44 1 A B44 2 B B44 4 D 24 1.75 1.75 101.8 -1.49 -0.09 25.8 79 20 6 10 10 6 1 0  B44 2 B B44 3 C 25 1.79 1.81 104.8 -1.42 -0.12 24.3 77 21 5 6 15 6 1 0  B44 2 B B44 3 C 26 1.64 1.76 109.2 -1.76 -0.15 26.9 81 20 7 10 10 7 3 0  B44 1 A B44 2 B B44 3 C B44 4 D 27 1.16 1.44 113.0 -1.51 -0.24 22.4 83 22 5 11 13 8 1 1  B44 2 B B44 4 D 28 1.15 1.45 116.0 -1.49 -0.25 21.6 81 23 4 7 18 8 1 1  B44 2 B B44 4 D 29 1.81 2.41 121.4 -1.87 -0.18 26.4 82 21 9 14 8 8 2 0  B44 2 B B44 3 C B44 4 D 30 1.72 2.02 124.4 -1.83 -0.18 25.8 81 23 8 10 14 8 2 0  B44 2 B B44 3 C B44 4 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.