PDBsum entry 3gcd Go to PDB code:  Pore analysis for: 3gcd calculated with MOLE 2.0 PDB id 3gcd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.65 2.85 29.8 -2.25 -0.86 21.6 90 3 3 5 0 0 0 0  IHP 214 D 2 1.37 1.43 43.8 -2.08 -0.80 29.1 86 1 5 1 2 0 0 0   3 2.60 2.60 51.3 -1.49 -0.38 14.2 88 3 2 5 3 0 3 0   4 1.27 1.45 68.2 -2.63 -0.76 34.2 82 5 10 3 2 1 0 0   5 2.75 2.88 81.9 -1.53 -0.50 15.3 83 5 5 5 4 2 4 0   6 2.81 2.81 137.9 -1.89 -0.63 14.1 83 7 7 11 4 3 4 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.