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PDBsum entry 3gcb

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Hydrolase PDB id
3gcb
Contents
Protein chain
458 a.a.
Ligands
SO4 ×5
GOL ×2
Waters ×421

References listed in PDB file
Key reference
Title The unusual active site of gal6/bleomycin hydrolase can act as a carboxypeptidase, Aminopeptidase, And peptide ligase.
Authors W.Zheng, S.A.Johnston, L.Joshua-Tor.
Ref. Cell, 1998, 93, 103-109. [DOI no: 10.1016/S0092-8674(00)81150-2]
PubMed id 9546396
Abstract
The Gal6 protease is in a class of cysteine peptidases identified by their ability to inactivate the anti-cancer drug bleomycin. The protein forms a barrel structure with the active sites embedded in a channel as in the proteasome. In Gal6 the C termini lie in the active site clefts. We show that Gal6 acts as a carboxypeptidase on its C terminus to convert itself to an aminopeptidase and peptide ligase. The substrate specificity of the peptidase activity is determined by the position of the C terminus of Gal6 rather than the sequence of the substrate. We propose a model to explain these diverse activities and Gal6's singular ability to inactivate bleomycin.
Figure 3.
Figure 3. G450A Has a Different Processing Pattern from the Wild-Type ProteinAn electrospray mass spectrometry shows G450A protein cleaving either one or three residues of the C terminus.
Figure 6.
Figure 6. Possible Mechanism of Bleomycin Hydrolysis by Bleomycin Hydrolase
The above figures are reprinted by permission from Cell Press: Cell (1998, 93, 103-109) copyright 1998.
Secondary reference #1
Title Crystal structure of a conserved protease that binds DNA: the bleomycin hydrolase, Gal6.
Authors L.Joshua-Tor, H.E.Xu, S.A.Johnston, D.C.Rees.
Ref. Science, 1995, 269, 945-950. [DOI no: 10.1126/science.7638617]
PubMed id 7638617
Full text Abstract
PROCHECK
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