PDBsum entry 3frx

Tunnel analysis for: 3frx calculated with

MOLE 2.0

PDB id

3frx

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.21

1.38

15.9

-1.79

-0.65

13.4

89

2

1

4

0

1

0

0

MSE 111 C

2

1.20

1.37

17.2

-1.19

-0.58

10.8

91

2

1

4

2

1

0

0

MSE 111 C

3

1.19

1.38

37.6

-1.52

-0.74

9.7

92

3

1

7

2

0

3

0

MSE 111 C MN 1140 C

4

1.19

1.39

17.7

-1.26

-0.59

10.9

91

2

1

4

2

1

0

0

MSE 111 B

5

1.19

1.38

43.9

-1.24

-0.71

8.1

93

3

1

7

4

0

3

0

MSE 111 B MN 1139 B

6

1.18

1.36

17.3

-1.33

-0.60

10.8

91

2

1

4

2

1

0

0

MSE 111 D

7

1.18

1.37

42.9

-1.30

-0.70

8.1

92

3

1

6

4

0

3

0

MSE 111 D MN 1141 D

8

1.19

1.37

54.7

-1.38

-0.70

12.3

94

4

3

7

6

0

1

0

MSE 111 D MN 1141 D

9

1.36

1.46

18.4

-0.44

-0.32

8.7

79

3

1

0

2

2

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.