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PDBsum entry 3fmp

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 3fmp calculated with MOLE 2.0 PDB id
3fmp
Pores calculated on whole structure Pores calculated excluding ligands

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14 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.91 2.07 26.6 -1.88 -0.68 9.4 73 1 2 2 1 0 2 0  
2 1.42 1.61 36.7 -1.66 -0.43 19.8 88 5 1 5 3 1 1 0  
3 1.47 1.51 98.7 -1.51 -0.46 23.1 85 8 8 7 8 1 0 0  
4 1.43 1.75 100.0 -2.00 -0.52 20.6 82 7 7 10 4 1 4 0  
5 1.47 1.51 116.5 -1.85 -0.45 20.3 82 9 6 8 6 2 3 0  
6 1.90 1.97 194.5 -1.83 -0.51 21.3 80 10 7 9 7 0 6 0  
7 1.48 1.48 218.2 -1.73 -0.45 23.0 82 14 10 9 10 2 4 0  
8 1.44 1.68 37.3 -1.57 -0.35 17.5 84 6 1 4 2 2 1 0  
9 1.45 1.74 67.2 -1.79 -0.50 19.8 84 5 5 7 4 1 2 0  
10 1.47 1.47 111.9 -1.53 -0.48 22.7 85 8 9 6 8 1 0 0  
11 2.03 2.19 114.1 -1.95 -0.64 23.7 80 4 6 6 4 0 1 0  
12 1.45 1.45 117.8 -1.53 -0.46 20.4 84 10 9 7 8 2 2 0  
13 1.45 1.83 128.9 -1.63 -0.55 21.6 82 5 9 10 6 1 1 1  
14 1.45 1.45 160.4 -1.49 -0.50 23.4 82 10 13 9 10 2 0 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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