PDBsum entry 3fjs Go to PDB code:  Tunnel analysis for: 3fjs calculated with MOLE 2.0 PDB id 3fjs Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.56 2.73 23.6 -0.69 -0.25 2.2 71 0 0 7 3 0 3 0   2 2.55 2.71 24.1 -0.86 -0.25 2.1 71 0 0 7 3 0 3 0   3 1.62 1.79 36.1 -1.79 -0.59 10.9 74 2 2 6 4 0 3 0   4 1.73 1.88 36.9 -1.80 -0.57 11.3 77 2 2 6 2 0 3 0   5 1.70 1.76 37.2 -1.60 -0.52 9.4 80 2 2 6 4 0 3 0   6 1.84 1.84 37.8 -1.42 -0.54 6.1 79 1 2 6 4 0 3 0   7 1.59 1.68 39.4 -1.84 -0.57 10.4 77 2 2 7 2 0 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.