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PDBsum entry 3fcs

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Top Page protein ligands metals Protein-protein interface(s) links
Cell adhesion/blood clotting PDB id
3fcs
Contents
Protein chains
914 a.a.
680 a.a.
603 a.a.
Ligands
NAG-NAG ×7
NAG-NAG-MAN-MAN
NAG-NAG-MAN
NAG-NAG-MAN-MAN-
MAN
NAG ×5
IMD ×6
Metals
_CA ×14
_MG ×2
Waters ×678
procheck   Generate full PROCHECK analyses

PROCHECK summary for 3fcs

Ramachandran plot

PROCHECK statistics

1. Ramachandran Plot statistics


                                         No. of
                                        residues     %-tage
                                         ------      ------
Most favoured regions      [A,B,L]         2201       83.7%*  
Additional allowed regions [a,b,l,p]        400       15.2%          
Generously allowed regions [~a,~b,~l,~p]     19        0.7%          
Disallowed regions         [XX]              10        0.4%*  
                                           ----      ------
Non-glycine and non-proline residues       2630      100.0%

End-residues (excl. Gly and Pro)             21

Glycine residues                            265
Proline residues                            185
                                           ----
Total number of residues                   3101


Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good quality model would be expected to have over 90% in the most favoured regions [A,B,L].


2. G-Factors

                                                Average
Parameter                            Score       Score
---------                            -----       -----
Dihedral angles:-
     Phi-psi distribution            -0.37      
     Chi1-chi2 distribution           0.04      
     Chi1 only                        0.09      
     Chi3 & chi4                      0.60      
     Omega                           -0.18      
                                                  -0.09      
                                                  =====
Main-chain covalent forces:-
     Main-chain bond lengths          0.68      
     Main-chain bond angles           0.61      
                                                   0.64      
                                                  =====

     OVERALL AVERAGE                               0.20      
                                                  =====

G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is.

Values below -0.5*  - unusual
Values below -1.0** - highly unusual
Important note: The main-chain bond-lengths and bond angles are compared with the Engh & Huber (1991) ideal values derived from small-molecule data. Therefore, structures refined using different restraints may show apparently large deviations from normality.

 

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