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PDBsum entry 3fcs

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3fcs calculated with MOLE 2.0 PDB id
3fcs
Pores calculated on whole structure Pores calculated excluding ligands

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22 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.62 4.54 25.8 -2.61 -0.51 29.7 80 7 1 2 0 1 0 0  
2 2.47 2.59 31.7 -1.76 -0.24 20.4 81 4 5 2 1 3 0 0  
3 2.49 2.73 65.5 -1.53 -0.41 19.5 80 3 6 5 5 2 2 0  NAG 1 F NAG 2 F
4 1.54 1.53 66.0 -1.33 -0.51 20.0 85 5 4 4 6 1 0 0  
5 1.35 1.35 114.6 -1.15 -0.20 16.0 80 4 9 7 9 6 3 0  NAG 1 F NAG 2 F MAN 3 F MAN 4 F
6 1.36 1.40 136.7 -1.02 -0.20 15.6 79 5 9 6 8 7 5 0  NAG 2 F
7 1.17 2.53 139.2 -1.13 -0.30 17.3 89 10 2 9 13 2 1 0  
8 1.19 2.55 193.6 -1.33 -0.27 17.5 83 13 7 16 15 7 3 0  IMD 5001 C NAG 1 K NAG 2 K
9 2.10 2.53 220.9 -1.36 -0.41 20.0 81 17 16 19 12 5 2 0  NAG 2 N
10 1.20 1.38 230.6 -1.51 -0.50 19.3 81 17 15 18 12 3 3 3  NAG 2 N
11 1.27 1.62 29.1 -1.47 -0.27 18.4 76 3 3 2 2 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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