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PDBsum entry 3f88
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Tunnel analysis for: 3f88 calculated with  MOLE 2.0
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PDB id
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3f88
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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9 tunnels,
coloured by tunnel radius |
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8 tunnels,
coloured by
tunnel radius
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8 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.22 |
2.70 |
25.5 |
1.04 |
0.26 |
6.6 |
74 |
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1 |
1 |
1 |
10 |
2 |
1 |
0 |
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2 |
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1.22 |
2.69 |
25.8 |
0.92 |
0.19 |
7.7 |
74 |
1 |
1 |
1 |
10 |
2 |
1 |
0 |
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3 |
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1.22 |
2.71 |
25.8 |
1.02 |
0.20 |
4.7 |
74 |
2 |
0 |
0 |
10 |
2 |
0 |
0 |
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4 |
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1.24 |
2.70 |
26.1 |
0.78 |
0.07 |
5.0 |
74 |
2 |
0 |
0 |
10 |
2 |
0 |
0 |
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5 |
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1.36 |
1.48 |
19.4 |
0.48 |
-0.13 |
4.9 |
75 |
1 |
0 |
2 |
6 |
2 |
0 |
0 |
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6 |
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1.37 |
1.48 |
28.1 |
0.59 |
0.21 |
7.0 |
73 |
1 |
1 |
2 |
6 |
3 |
1 |
0 |
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7 |
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1.22 |
1.22 |
19.6 |
-0.90 |
-0.66 |
6.5 |
94 |
2 |
0 |
5 |
1 |
1 |
1 |
0 |
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8 |
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1.12 |
2.66 |
16.9 |
1.59 |
0.81 |
2.5 |
66 |
1 |
0 |
0 |
3 |
4 |
2 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program