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PDBsum entry 3f7p

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protein ligands metals Protein-protein interface(s) links
Structural protein/cell adhesion PDB id
3f7p

 

 

 

 

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Contents
Protein chains
231 a.a. *
200 a.a. *
212 a.a. *
Ligands
EDO ×2
PEG
Metals
_CA
Waters ×20
* Residue conservation analysis
PDB id:
3f7p
Name: Structural protein/cell adhesion
Title: Crystal structure of a complex between integrin beta4 and plectin
Structure: Plectin-1. Chain: a, b. Fragment: actin-binding domain, residues 1-293. Synonym: plectin 1c, pltn, pcn, hemidesmosomal protein 1, hd1, plectin-6, plectin-11. Engineered: yes. Integrin beta-4. Chain: c, d, e. Fragment: fibronectin type-iii, residues 1126-1370.
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: plec-1 (isoform 1c), plec1. Expressed in: escherichia coli. Expression_system_taxid: 469008. Gene: itgb4.
Resolution:
2.75Å     R-factor:   0.207     R-free:   0.257
Authors: J.M.De Pereda
Key ref: J.M.de Pereda et al. (2009). Structural basis of the interaction between integrin alpha6beta4 and plectin at the hemidesmosomes. Embo J, 28, 1180-1190. PubMed id: 19242489
Date:
10-Nov-08     Release date:   10-Mar-09    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q15149  (PLEC_HUMAN) -  Plectin from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
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Seq:
Struc:
 
Seq:
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Seq:
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Seq:
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Seq:
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Seq:
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Seq:
Struc:
4684 a.a.
231 a.a.*
Protein chains
Pfam   ArchSchema ?
P16144  (ITB4_HUMAN) -  Integrin beta-4 from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1822 a.a.
200 a.a.
Protein chain
Pfam   ArchSchema ?
P16144  (ITB4_HUMAN) -  Integrin beta-4 from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1822 a.a.
212 a.a.
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 5 residue positions (black crosses)

 

 
Embo J 28:1180-1190 (2009)
PubMed id: 19242489  
 
 
Structural basis of the interaction between integrin alpha6beta4 and plectin at the hemidesmosomes.
J.M.de Pereda, M.P.Lillo, A.Sonnenberg.
 
  ABSTRACT  
 
The interaction between the integrin alpha6beta4 and plectin is essential for the assembly and stability of hemidesmosomes, which are junctional adhesion complexes that anchor epithelial cells to the basement membrane. We describe the crystal structure at 2.75 A resolution of the primary alpha6beta4-plectin complex, formed by the first pair of fibronectin type III domains and the N-terminal region of the connecting segment of beta4 and the actin-binding domain of plectin. Two missense mutations in beta4 (R1225H and R1281W) linked to nonlethal forms of epidermolysis bullosa prevent essential intermolecular contacts. We also present two structures at 1.75 and 2.05 A resolution of the beta4 moiety in the absence of plectin, which reveal a major rearrangement of the connecting segment of beta4 on binding to plectin. This conformational switch is correlated with the way alpha6beta4 promotes stable adhesion or cell migration and suggests an allosteric control of the integrin.
 

Literature references that cite this PDB file's key reference

  PubMed id Reference
20971194 F.Yang, A.P.West, and P.J.Bjorkman (2011).
Crystal structure of a hemojuvelin-binding fragment of neogenin at 1.8Å.
  J Struct Biol, 174, 239-244.
PDB code: 3p4l
20509141 C.Sun, X.Liu, L.Qi, J.Xu, J.Zhao, Y.Zhang, S.Zhang, and J.Miao (2010).
Modulation of vascular endothelial cell senescence by integrin β4.
  J Cell Physiol, 225, 673-681.  
19945615 H.J.Chung, and J.Uitto (2010).
Epidermolysis bullosa with pyloric atresia.
  Dermatol Clin, 28, 43-54.  
19945621 H.J.Chung, and J.Uitto (2010).
Type VII collagen: the anchoring fibril protein at fault in dystrophic epidermolysis bullosa.
  Dermatol Clin, 28, 93.  
20164846 R.W.Groves, L.Liu, P.J.Dopping-Hepenstal, H.S.Markus, P.A.Lovell, L.Ozoemena, J.E.Lai-Cheong, J.Gawler, K.Owaribe, T.Hashimoto, J.E.Mellerio, J.B.Mee, and J.A.McGrath (2010).
A homozygous nonsense mutation within the dystonin gene coding for the coiled-coil domain of the epithelial isoform of BPAG1 underlies a new subtype of autosomal recessive epidermolysis bullosa simplex.
  J Invest Dermatol, 130, 1551-1557.  
  19736524 J.M.de Pereda, E.Ortega, N.Alonso-García, M.Gómez-Hernández, and A.Sonnenberg (2009).
Advances and perspectives of the architecture of hemidesmosomes: lessons from structural biology.
  Cell Adh Migr, 3, 361-364.  
19622870 N.Alonso-García, A.Inglés-Prieto, A.Sonnenberg, and J.M.de Pereda (2009).
Structure of the Calx-beta domain of the integrin beta4 subunit: insights into function and cation-independent stability.
  Acta Crystallogr D Biol Crystallogr, 65, 858-871.
PDB codes: 3fq4 3fso 3h6a
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB code is shown on the right.

 

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