PDBsum entry 3f2b Go to PDB code:  Tunnel analysis for: 3f2b calculated with MOLE 2.0 PDB id 3f2b Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.26 35.2 -1.38 0.03 22.6 80 7 3 3 1 5 0 0  MG 5 A DGT 1456 A DC 16 P DC 17 P DG 6 T 2 1.30 1.45 35.6 -2.01 -0.10 25.2 72 8 2 0 1 3 2 0  MG 5 A DGT 1456 A DC 16 P DC 17 P DG 6 T DG 7 T DT 8 T 3 1.32 1.52 42.7 -1.28 -0.41 18.9 85 6 3 4 4 5 2 0  DC 5 T DG 6 T DG 7 T DT 8 T 4 1.30 1.36 54.2 -1.40 -0.48 19.7 83 5 5 4 2 5 3 0  DG 10 P DG 11 P DC 13 P DG 6 T DG 7 T DT 8 T DG 10 T DC 16 T 5 1.26 1.28 63.3 -1.63 -0.49 19.4 86 6 4 6 3 5 3 0  DA 1 T DT 2 T DA 3 T DA 4 T DG 6 T DG 7 T DT 8 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.