spacer
spacer

PDBsum entry 3epg

Go to PDB code: 
Top Page protein dna_rna ligands metals pores links
Pore analysis for: 3epg calculated with MOLE 2.0 PDB id
3epg
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
3 pores, coloured by radius 2 pores, coloured by radius 2 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.20 2.46 62.6 -1.11 -0.05 14.2 74 2 0 4 3 2 1 2  DG 9 B DA 10 B DC 11 B DC 12 B NA 1 C 2EG 840 C
DT 844 C DC 845 C DC 846 C
2 1.94 3.06 121.5 -1.59 -0.59 18.6 83 4 8 5 3 0 2 0  NA 1 C DC 845 C DC 846 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer