spacer
spacer

PDBsum entry 3emh

Go to PDB code: 
Top Page protein ligands tunnels links
Tunnel analysis for: 3emh calculated with MOLE 2.0 PDB id
3emh
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.25 1.29 29.9 -1.22 -0.09 17.1 78 5 1 2 1 2 2 0  SO4 335 A
2 1.23 1.73 18.0 -0.16 -0.42 12.3 88 2 2 1 5 0 0 0  
3 1.09 1.54 22.2 -0.03 -0.39 10.2 84 3 1 1 6 0 0 0  
4 1.33 3.16 17.8 -0.70 0.01 15.8 79 1 4 0 3 1 1 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer