PDBsum entry 3ef1 Go to PDB code:  Tunnel analysis for: 3ef1 calculated with MOLE 2.0 PDB id 3ef1 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.30 1.67 17.7 -0.25 -0.23 16.3 88 0 2 3 3 1 0 1   2 1.68 2.06 18.4 0.76 0.15 5.9 82 1 1 2 6 1 1 0   3 1.66 3.18 18.8 -0.28 0.14 14.5 86 3 2 2 4 1 0 0   4 1.68 1.93 30.9 -0.07 0.05 15.7 79 3 3 2 7 1 0 0   5 1.86 2.46 15.9 -2.53 -0.49 23.8 79 2 2 2 1 2 0 0   6 1.22 1.34 20.8 -0.53 -0.09 7.9 78 1 1 2 4 2 0 0   7 1.56 2.41 21.9 -1.07 0.03 13.0 78 2 1 3 2 3 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.