PDBsum entry 3ed1 Go to PDB code:  Pore analysis for: 3ed1 calculated with MOLE 2.0 PDB id 3ed1 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.95 3.08 36.3 -0.77 -0.04 17.6 81 5 1 3 4 0 3 0  NO3 601 B 2 5.20 5.41 40.5 -1.10 -0.06 16.9 83 5 3 5 3 0 2 0   3 2.04 2.27 47.5 -1.21 -0.33 24.2 78 4 6 1 6 0 3 0   4 1.39 3.70 47.7 -1.01 0.12 18.3 80 6 0 6 8 1 2 0  MPD 501 C NO3 604 C MPD 501 D NO3 603 D 5 1.82 1.98 59.4 -1.73 -0.32 19.7 77 4 8 3 2 1 3 0   6 2.92 3.56 64.9 -2.33 -0.74 24.8 86 5 4 3 1 0 1 0  NO3 601 A 7 1.67 1.67 65.4 -1.02 -0.21 16.1 76 6 4 2 5 1 3 0   8 1.99 1.99 65.8 -1.61 -0.45 25.1 83 6 8 2 5 0 2 0   9 1.38 3.69 68.1 -0.85 -0.03 20.6 78 6 7 4 12 1 3 0  MPD 501 C NO3 604 C MPD 501 D NO3 603 D 10 3.37 3.53 74.6 -2.16 -0.63 23.4 85 9 8 4 4 0 3 0   11 1.34 1.85 97.8 -0.88 0.08 15.7 80 7 0 9 10 2 2 0  MPD 501 E PO4 701 E MPD 501 F NO3 603 F 12 1.33 1.84 102.6 -0.97 0.02 17.3 80 8 1 11 11 3 2 0  MPD 501 E PO4 701 E MPD 501 F NO3 603 F Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.