PDBsum entry 3e88 Go to PDB code:  Tunnel analysis for: 3e88 calculated with MOLE 2.0 PDB id 3e88 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 1.19 29.5 0.10 -0.11 7.3 77 4 1 0 4 3 0 0   2 1.18 1.23 26.7 0.08 -0.14 7.5 76 2 3 0 3 3 0 0   3 1.35 1.35 16.4 0.67 0.22 14.0 79 2 2 1 3 2 0 0   4 1.24 1.38 18.4 0.96 0.23 11.9 81 2 2 1 4 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.