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PDBsum entry 3e00

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3e00 calculated with MOLE 2.0 PDB id
3e00
Pores calculated on whole structure Pores calculated excluding ligands

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3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.33 1.33 28.0 -1.68 -0.72 17.6 79 3 1 1 0 0 0 0  DA 3013 C DA 3014 C DG 3015 C DG 3016 C DT 3017 C
DC 3018 C DT 4007 F DT 4008 F DT 4009 F DG 4010 F
DA 4011 F DC 4012 F
2 1.33 1.33 36.3 -2.69 -0.66 29.2 78 7 2 1 0 0 0 0  DA 3014 C DG 3015 C DG 3016 C DT 3017 C DC 3018 C
DT 4007 F DT 4008 F DT 4009 F DG 4010 F
3 2.60 3.80 42.6 -2.62 -0.68 38.0 81 7 7 0 3 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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