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PDBsum entry 3dzy

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3dzy calculated with MOLE 2.0 PDB id
3dzy
Pores calculated on whole structure Pores calculated excluding ligands

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3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.03 3.18 43.5 -2.60 -0.66 34.3 87 8 5 3 2 0 0 0  
2 1.45 2.67 51.6 -1.06 -0.25 19.9 87 5 1 1 4 1 0 0  DC 3005 C DT 3006 C DA 4011 F DC 4012 F DC 4013 F
3 1.64 1.81 99.2 -2.14 -0.64 24.5 75 9 6 3 5 1 0 2  DT 3010 C DC 3011 C DT 3017 C DT 4007 F DT 4008 F
DT 4009 F

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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