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PDBsum entry 3dzd
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Tunnel analysis for: 3dzd calculated with  MOLE 2.0
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PDB id
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3dzd
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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1 tunnel,
coloured by tunnel radius |
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6 tunnels,
coloured by
tunnel radius
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6 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.13 |
1.29 |
40.4 |
-1.12 |
-0.31 |
22.8 |
81 |
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5 |
4 |
2 |
5 |
1 |
0 |
0 |
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ADP 370 B
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2 |
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1.12 |
1.30 |
52.0 |
-2.09 |
-0.37 |
34.0 |
75 |
10 |
8 |
1 |
6 |
3 |
1 |
0 |
ADP 370 B
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3 |
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1.13 |
1.32 |
62.6 |
-1.23 |
-0.20 |
20.5 |
77 |
8 |
3 |
3 |
7 |
3 |
2 |
0 |
ADP 370 B
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4 |
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1.17 |
1.36 |
69.4 |
-1.75 |
-0.29 |
29.1 |
77 |
11 |
6 |
2 |
5 |
3 |
0 |
0 |
ADP 370 A ADP 370 B
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5 |
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1.16 |
1.36 |
70.6 |
-1.39 |
-0.20 |
25.0 |
74 |
11 |
5 |
2 |
6 |
4 |
2 |
0 |
ADP 370 B
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6 |
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1.17 |
1.48 |
18.2 |
-0.22 |
-0.12 |
15.3 |
74 |
2 |
1 |
0 |
2 |
2 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program