PDBsum entry 3dys Go to PDB code:  Tunnel analysis for: 3dys calculated with MOLE 2.0 PDB id 3dys Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.15 1.95 27.0 0.35 0.51 6.7 70 1 0 1 5 5 0 1  IBM 900 B 2 1.36 1.36 26.1 -0.84 -0.41 11.2 80 1 2 1 3 1 3 0   3 1.29 1.29 16.5 -1.10 -0.39 24.2 75 2 1 1 3 0 0 0   4 1.29 1.29 24.2 -1.19 -0.04 24.0 77 2 1 2 3 2 0 0   5 1.67 2.02 16.8 -1.24 0.09 30.8 71 2 1 0 3 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.