spacer
spacer

PDBsum entry 3dwl

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 3dwl calculated with MOLE 2.0 PDB id
3dwl
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
20 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.58 2.01 31.6 -0.06 0.37 10.9 59 3 2 0 1 6 0 1  
2 1.62 3.09 57.5 -1.68 -0.31 20.4 80 6 3 5 4 5 0 0  
3 1.57 1.96 74.5 -0.87 0.02 17.7 71 7 4 3 5 10 0 1  
4 1.21 1.21 107.2 -1.31 -0.36 19.6 86 6 6 6 7 2 2 0  
5 1.77 1.89 185.5 -0.86 -0.37 17.1 87 7 8 8 9 1 1 0  
6 1.28 2.20 263.3 -1.14 -0.39 16.7 81 14 15 12 15 7 1 0  
7 1.65 1.64 255.8 -0.77 -0.39 9.0 79 6 6 11 10 8 6 1  
8 1.29 1.29 271.3 -1.01 -0.27 13.2 81 10 15 18 19 13 10 1  
9 1.23 2.23 298.5 -1.38 -0.36 19.3 80 16 19 12 13 11 2 0  
10 1.20 1.19 316.0 -1.17 -0.38 13.8 80 15 13 14 15 11 7 0  
11 1.32 2.06 385.2 -1.11 -0.36 17.2 81 20 19 15 19 10 2 0  
12 1.22 2.30 381.9 -1.24 -0.32 17.7 82 25 25 19 25 14 2 1  
13 1.30 1.48 427.8 -0.98 -0.34 14.6 82 21 20 21 27 15 7 2  
14 1.21 1.21 484.6 -1.10 -0.38 16.2 81 26 20 18 25 13 1 1  
15 1.52 1.62 513.1 -1.15 -0.41 15.5 80 21 29 23 25 17 9 2  
16 1.46 1.55 498.0 -1.10 -0.49 14.7 82 21 23 20 24 11 2 1  
17 1.49 1.47 526.3 -1.07 -0.37 14.3 80 18 27 25 25 17 12 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer