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PDBsum entry 3dvd

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Cleft analysis for: 3dvd PDB id
3dvd
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 3273.33 3.23 66.16 3 10.94 1 15.81 1 11 8 9 12 7 10 0  
2 1014.19 0.00 63.77 4 7.52 6 7.41 6 6 3 6 2 2 7 0  
3 798.19 0.00 58.43 9 5.28 9 8.50 3 5 2 3 3 5 1 0  
4 769.92 0.00 60.56 7 7.64 5 9.80 2 5 3 6 6 1 2 0  
5 533.67 0.00 48.96 10 4.07 10 7.98 5 3 2 2 3 0 4 0  
6 429.89 0.00 73.42 1 8.30 4 8.22 4 4 1 2 2 1 4 0  
7 358.59 0.00 59.05 8 9.41 2 7.36 7 1 2 5 1 2 0 0  
8 366.19 0.00 62.18 6 9.31 3 6.32 8 2 3 2 3 3 2 0  
9 319.78 0.00 62.20 5 5.84 8 5.92 9 2 4 4 1 0 1 0  
10 269.16 0.00 69.35 2 7.29 7 0.00 10 5 1 1 0 3 0 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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