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PDBsum entry 3dtu

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 3dtu calculated with MOLE 2.0 PDB id
3dtu
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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9 tunnels, coloured by tunnel radius 18 tunnels, coloured by tunnel radius 18 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 2.16 23.5 -1.04 -0.17 18.0 76 2 2 0 3 3 0 0  583 TRD C,584 TRD C
2 2.16 24.0 -1.67 -0.31 23.3 78 4 4 0 1 3 1 0  583 TRD C,584 TRD C
3 2.13 35.1 -1.00 -0.01 13.5 79 3 3 2 3 4 3 0  568 DMU C,576 DXC C,583 TRD C,584 TRD C
4 1.28 36.6 2.56 0.91 0.8 69 0 0 1 12 7 0 0  
5 1.59 13.2 0.24 0.57 17.8 71 2 1 0 3 4 0 0  7 TRD D
6 1.52 16.5 0.07 0.46 19.7 77 2 1 0 3 3 0 0  7 TRD D
7 1.30 21.6 0.57 -0.10 2.7 77 1 0 4 4 2 1 0  
8 1.27 14.8 1.66 0.38 1.1 81 0 0 0 3 2 0 0  1010 TRD A
9 1.27 17.3 2.00 0.70 1.1 72 0 0 0 6 3 0 0  1010 TRD A
10 2.05 18.4 -1.53 -0.12 20.6 73 2 2 0 1 3 2 0  
11 1.60 11.5 -2.03 -0.65 11.8 77 1 1 3 1 1 0 0  
12 2.11 6.3 2.85 1.37 0.5 56 0 0 0 3 3 0 0  1003 DMU B
13 1.92 4.6 -1.43 -0.39 11.6 85 1 1 0 0 0 1 0  
14 1.79 7.7 -1.67 -0.46 19.5 75 1 1 0 0 0 1 0  
15 1.60 10.7 -1.81 -0.65 11.2 90 1 1 4 1 0 0 0  
16 1.60 11.4 -1.81 -0.64 11.1 90 1 1 4 1 0 0 0  
17 1.62 10.5 -0.82 -0.07 18.1 71 1 3 0 1 2 1 0  
18 1.42 6.4 0.53 0.67 1.3 63 0 0 0 2 3 1 0  1504 TRD A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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