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PDBsum entry 3dt1

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Transferase PDB id
3dt1
Contents
Protein chain
356 a.a.
Ligands
P40
Waters ×10

References listed in PDB file
Key reference
Title Discovery of highly selective and potent p38 inhibitors based on a phthalazine scaffold.
Authors B.Herberich, G.Q.Cao, P.P.Chakrabarti, J.R.Falsey, L.Pettus, R.M.Rzasa, A.B.Reed, A.Reichelt, K.Sham, M.Thaman, R.P.Wurz, S.Xu, D.Zhang, F.Hsieh, M.R.Lee, R.Syed, V.Li, D.Grosfeld, M.H.Plant, B.Henkle, L.Sherman, S.Middleton, L.M.Wong, A.S.Tasker.
Ref. J Med Chem, 2008, 51, 6271-6279.
PubMed id 18817365
Abstract
Investigations into the structure-activity relationships (SAR) of a series of phthalazine-based inhibitors of p38 are described. These efforts originated from quinazoline 1 and through rational design led to the development of a series of orally bioavailable, potent, and selective inhibitors. Kinase selectivity was achieved by exploiting a collection of interactions with p38alpha including close contact to Ala157, occupation of the hydrophobic gatekeeper pocket, and a residue flip with Gly110. Substitutions on the phthalazine influenced the pharmacokinetic properties, of which compound 16 displayed the most desirable profile. Oral dosing (0.03 mg/kg) of 16 in rats 1 h prior to LPS challenge gave a >50% decrease in TNFalpha production.
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