PDBsum entry 3dsl

Pore analysis for: 3dsl calculated with

MOLE 2.0

PDB id

3dsl

Pores calculated on whole structure

Pores calculated excluding ligands

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9 pores, coloured by radius

9 pores, coloured by radius

9 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.91

1.92

26.1

-1.53

-0.64

14.6

88

3

4

3

2

0

0

0

2

2.86

2.86

28.5

-1.93

-0.75

18.9

85

4

3

3

1

0

0

0

3

3.69

5.63

33.4

-2.21

-0.09

27.0

76

7

1

3

3

1

2

0

4

2.92

2.93

33.7

-2.29

-0.63

24.0

84

5

3

4

1

0

1

0

5

4.19

4.37

35.2

-1.38

-0.32

11.2

77

2

1

3

2

1

1

1

6

1.81

2.18

43.3

-1.44

-0.29

17.4

86

2

5

3

4

2

1

1

FLE 504 A TRP 505 A

7

1.59

1.60

55.8

-1.72

-0.34

22.2

79

4

3

3

1

4

3

0

FLE 506 A TRP 507 A

8

2.94

2.94

57.1

-2.39

-0.31

23.6

79

6

2

5

3

2

2

0

9

1.60

1.65

83.3

-1.47

-0.30

21.6

81

4

5

4

1

4

3

0

FLE 506 A TRP 507 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.