spacer
spacer

PDBsum entry 3do0

Go to PDB code: 
Top Page protein ligands metals clefts links
Cleft analysis for: 3do0 PDB id
3do0
View options
Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 1698.47 2.23 67.24 1 10.86 1 10.06 1 4 4 8 9 7 2 0 VAL 1001[A], LYS 1002[A] (17 atoms)
2 763.17 0.00 57.33 7 7.40 5 7.80 4 0 5 3 5 1 3 0  
3 752.20 0.00 55.74 8 5.94 7 6.78 9 4 1 5 2 2 1 0  
4 898.17 0.00 64.49 3 8.07 4 7.70 5 4 3 5 7 3 2 0  
5 796.92 0.00 60.83 5 8.41 2 6.96 7 2 3 3 5 4 8 0  
6 567.42 0.00 57.93 6 5.75 9 8.31 3 1 3 1 4 4 0 0  
7 576.28 0.00 63.93 4 8.36 3 8.63 2 3 1 2 2 3 2 0  
8 487.69 0.00 55.38 9 6.39 6 6.82 8 1 0 7 2 2 3 0  
9 226.97 0.00 64.80 2 5.78 8 7.13 6 0 1 6 1 0 0 0  
10 291.09 0.00 48.50 10 2.72 10 6.76 10 1 2 1 1 2 2 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
spacer
spacer