PDBsum entry 3dnm Go to PDB code:  Tunnel analysis for: 3dnm calculated with MOLE 2.0 PDB id 3dnm Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.20 1.43 24.1 0.31 -0.15 6.3 87 1 1 3 4 1 0 0  BME 330 B 2 1.20 1.26 25.9 0.48 -0.03 6.4 81 1 1 3 6 1 0 0  BME 330 B 3 1.19 1.41 28.1 -0.28 -0.44 10.4 84 2 2 2 5 1 0 0  BME 330 B 4 1.56 3.33 24.0 0.70 0.56 8.2 70 1 0 2 8 4 0 0  BME 326 D 5 1.56 3.26 24.6 0.35 0.22 13.2 74 2 1 1 8 1 0 0  BME 326 D 6 1.55 3.00 26.8 -0.73 -0.19 21.1 78 2 3 1 7 1 0 0  BME 326 D 7 1.32 1.32 23.2 -2.50 -0.49 39.2 83 2 2 0 2 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.