PDBsum entry 3dnd Go to PDB code:  Tunnel analysis for: 3dnd calculated with MOLE 2.0 PDB id 3dnd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.29 1.29 21.1 -0.57 -0.46 13.0 82 0 2 2 2 3 0 0   2 1.30 1.30 23.9 -1.13 -0.52 16.4 83 2 2 2 2 3 0 0   3 1.26 1.65 46.7 -0.08 -0.21 12.9 78 3 3 1 7 4 0 0   4 1.55 1.64 18.6 -1.75 -0.32 25.1 77 3 0 0 0 1 0 0   5 2.49 2.64 16.4 -1.89 -0.42 31.5 83 3 1 0 1 0 0 0  TPO 197 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.