PDBsum entry 3dmd Go to PDB code:  Pore analysis for: 3dmd calculated with MOLE 2.0 PDB id 3dmd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.63 2.95 27.3 -3.03 -0.86 33.7 81 3 9 3 0 1 0 0   2 2.82 2.82 42.9 -2.02 -0.70 27.5 79 6 8 2 1 0 1 0   3 1.40 1.57 171.0 -2.43 -0.48 32.0 75 11 7 0 3 3 2 0  GOL 327 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.