PDBsum entry 3dkb Go to PDB code:  Pore analysis for: 3dkb calculated with MOLE 2.0 PDB id 3dkb Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   19 pores, coloured by radius 19 pores, coloured by radius 19 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.15 2.60 32.1 -2.80 -0.31 33.8 78 8 2 3 1 2 0 0   2 1.24 2.99 37.4 -2.57 -0.18 26.7 74 9 6 4 0 6 0 0   3 1.30 1.63 42.2 -0.86 -0.39 14.9 82 3 6 6 5 0 5 0   4 1.53 1.54 47.0 -0.80 -0.16 13.8 80 10 2 7 12 1 3 1   5 1.53 1.53 52.9 -1.07 -0.33 14.2 80 11 5 8 11 1 3 1   6 1.53 1.53 53.0 -0.76 -0.21 13.7 77 11 5 6 12 1 5 1   7 1.71 2.05 63.4 -1.79 -0.33 22.6 82 8 4 5 6 2 3 0   8 2.18 2.53 86.0 -2.02 -0.47 24.6 82 13 7 8 3 2 5 0   9 1.51 1.52 89.9 -1.19 -0.35 18.0 82 17 6 12 12 1 6 1   10 1.30 1.62 101.3 -1.38 -0.50 19.2 84 6 11 9 5 1 5 0   11 2.18 3.00 110.7 -2.49 -0.51 28.3 80 12 9 6 2 2 4 0   12 1.55 1.55 163.1 -1.61 -0.35 16.7 79 16 13 19 13 5 8 1   13 1.54 1.52 172.9 -2.14 -0.55 21.5 81 18 14 21 5 4 5 0   14 2.14 3.05 175.0 -2.33 -0.54 29.5 81 17 11 13 8 1 4 0   15 1.07 1.28 229.7 -1.72 -0.42 21.2 78 24 14 12 13 6 9 3   16 1.10 3.86 293.0 -1.52 -0.41 19.9 79 23 19 19 20 7 8 2   17 1.22 3.56 293.1 -2.37 -0.55 24.1 79 22 20 20 6 7 7 2   18 1.46 1.45 320.1 -1.82 -0.43 22.3 79 30 24 18 15 8 14 3   19 1.87 3.54 383.5 -2.24 -0.53 24.2 80 29 30 26 8 9 12 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.