PDBsum entry 3dj6 Go to PDB code:  Tunnel analysis for: 3dj6 calculated with MOLE 2.0 PDB id 3dj6 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.80 19.5 0.84 0.24 8.5 72 2 0 1 3 2 0 1   2 1.17 1.17 30.6 0.91 0.27 4.8 65 1 1 2 6 4 0 1  AK6 1 A 3 1.19 1.19 37.2 1.75 0.54 3.9 70 2 0 1 11 3 0 1  AK6 1 A 4 1.21 1.89 38.1 1.77 0.57 1.3 65 0 0 1 13 3 0 1  AK6 1 A 5 1.18 1.18 40.6 0.49 0.00 4.8 67 1 0 3 6 4 0 1  AK6 1 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.