PDBsum entry 3ddk Go to PDB code:  Tunnel analysis for: 3ddk calculated with MOLE 2.0 PDB id 3ddk Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.42 1.42 25.7 -1.86 -0.55 21.3 86 4 2 3 1 1 1 0  SO4 920 A 2 1.40 1.40 35.8 -2.30 -0.59 26.2 84 5 4 3 0 1 1 0  SO4 920 A 3 1.40 1.40 38.2 -2.53 -0.63 30.7 78 6 6 2 0 2 1 0  SO4 919 A SO4 920 A 4 1.40 1.40 45.2 -2.22 -0.52 25.3 80 5 5 4 1 2 2 0   5 1.40 1.40 50.3 -1.78 -0.42 21.5 80 6 4 3 1 3 2 0   6 1.41 1.41 60.7 -2.03 -0.45 23.5 87 7 3 7 4 2 2 0   7 1.13 1.24 15.6 -1.57 -0.41 18.1 81 3 0 1 2 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.