spacer
spacer

PDBsum entry 3dd8

Go to PDB code: 
Top Page protein ligands metals clefts links
Cleft analysis for: 3dd8 PDB id
3dd8
View options
Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 2062.12 1.92 63.79 5 10.96 1 12.62 1 9 4 6 4 5 10 0  
2 1073.67 0.00 72.87 3 8.43 4 8.59 2 5 3 6 10 5 2 0 2C7 300[A] (20 atoms)
3 919.69 0.00 61.21 7 9.82 3 8.26 3 4 3 5 6 1 2 0  
4 733.22 0.00 67.75 4 7.66 5 6.85 8 4 3 5 2 2 4 0  
5 591.47 0.00 51.33 10 4.64 9 7.71 6 3 2 2 3 0 3 0  
6 363.23 0.00 63.76 6 6.63 6 6.25 9 1 2 2 3 2 2 0  
7 360.70 0.00 56.57 9 5.72 7 7.65 7 3 0 1 2 3 0 0  
8 319.78 0.00 61.14 8 5.71 8 7.86 5 2 2 3 1 2 0 0  
9 231.61 0.00 75.00 1 4.23 10 7.93 4 4 1 1 0 3 0 0  
10 312.19 0.00 73.25 2 9.87 2 0.00 10 3 2 0 3 0 0 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
spacer
spacer