spacer
spacer

PDBsum entry 3dco

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3dco calculated with MOLE 2.0 PDB id
3dco
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
4 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.52 2.99 27.1 -1.67 -0.53 20.2 83 2 3 3 1 0 1 1  
2 1.11 1.28 29.9 -1.45 -0.62 13.9 83 1 3 6 2 1 2 1  GDP 600 B
3 2.45 2.45 37.3 -1.69 -0.39 19.9 84 4 8 3 3 1 0 0  
4 1.47 1.47 44.8 -1.80 -0.40 21.7 85 4 7 3 2 1 0 0  
5 1.23 1.23 80.4 -1.71 -0.41 26.0 85 8 7 2 4 0 2 0  TA1 601 B
6 1.65 1.71 88.0 -1.85 -0.47 17.0 81 7 4 6 3 2 0 0  TA1 601 B
7 1.39 1.64 209.6 -1.68 -0.47 22.5 84 9 8 10 11 3 1 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer